Index of /noah/
../
011725_grant_atac_rna/ 17-Jan-2025 13:46 -
012125_grant_renamed/ 21-Jan-2025 12:59 -
012125_tobias/ 21-Jan-2025 15:55 -
012225_tobias/ 22-Jan-2025 15:51 -
042425_grant_rna/ 24-Apr-2025 18:50 -
042925/ 28-Apr-2025 14:12 -
042925_RNA/ 28-Apr-2025 14:58 -
043025_realign/ 30-Apr-2025 11:27 -
050125_test/ 01-May-2025 09:16 -
050125_test_RNA/ 01-May-2025 11:02 -
051925_MCL_primary/ 19-May-2025 09:02 -
0705_hpap_test/ 05-Jul-2023 13:15 -
080825_chip/ 08-Aug-2025 10:27 -
110524_atac/ 05-Nov-2024 13:17 -
112224_atac/ 22-Nov-2024 09:15 -
ATAC_EBF1mut-dPLD_bw/ 31-Jan-2025 12:59 -
ChIP/ 24-May-2023 12:31 -
EBF1HiChIP_MP_reCluster/ 26-Jul-2023 20:06 -
EBF1_HiChIP/ 19-Jun-2023 11:03 -
GM12878_public/ 02-Apr-2025 12:39 -
GSE141333/ 18-Apr-2025 09:42 -
MCL_cellLines/ 17-Apr-2025 14:48 -
MicroC_hic/ 18-May-2023 13:54 -
ONT-data/ 26-Jun-2025 14:52 -
PDX9_DFBL_RNAseq_bw/ 19-May-2025 15:24 -
REC1_3C/ 08-Apr-2025 13:34 -
Rec1/ 20-Mar-2025 13:04 -
allEBF1HiChIPSuperHub_longRange/ 26-Jun-2023 20:18 -
bw/ 24-Apr-2024 10:24 -
bw_042424/ 24-Apr-2024 10:29 -
dnd41_assembly/ 19-Aug-2025 15:08 -
featureMatrix/ 29-Mar-2023 13:55 -
granta_assembly/ 19-Aug-2025 07:56 -
granta_phased_assembly/ 21-Aug-2025 15:39 -
histone_ChIP/ 24-May-2023 11:29 -
hpap_0224/ 26-Feb-2024 09:41 -
hpap_bigWigs/ 13-Jun-2023 08:56 -
newpipelines/ 14-Sep-2023 08:43 -
outputs/ 24-Oct-2025 08:50 -
rec1_assembly/ 19-Aug-2025 13:03 -
superhub_lostEdges_longRange_washU/ 26-Jun-2023 20:18 -
tobias_040725/ 07-Apr-2025 10:28 -
tobias_101724/ 17-Oct-2024 14:15 -
tobias_121724/ 17-Dec-2024 09:32 -
tobias_chip_010325/ 03-Jan-2025 09:34 -
052423_washuBrowser_MicroC_EBF1-HiChIP_boundari..> 26-Jun-2023 20:20 4611
062623_EBF1HiChIP_Quantified_Hub911_lostLoops.json 26-Jun-2023 20:52 2796
0705_allHPAP_bw_WashU.json 05-Jul-2023 13:11 71868
0705_allHPAP_bw_Wash_url.txt 05-Jul-2023 13:11 122
072423_MicroC_0hr-24hr-48hr_heatmap_Granta519.json 26-Jul-2023 20:04 2453
20250520_ONT_PBE33858_DND41_10KB_combined_trimm..> 12-Aug-2025 13:40 3023438015
20250520_ONT_PBE33858_DND41_10KB_combined_trimm..> 12-Aug-2025 13:41 3040967386
CUTLL1_H3K27ac_merged.bw 14-Apr-2024 20:10 648498439
CUTLL1_ctrl_RNAseq.bw 05-Apr-2024 10:45 191828843
DND41_10KB_ONT_porechopped.bam 08-Jul-2025 08:40 71
DND41_10KB_ONT_porechopped.bam.bai 08-Jul-2025 08:40 75
DND41_MicroC_ctrl_hg38_mapq30.hic 07-Jul-2025 12:28 11060184785
EBF1_HiChIP_RG.hic 11-Sep-2024 12:50 6336049081
GSM6576193_ATAC_DN3-KO_HMG-E10_EV_Rep1_21135420..> 17-Jan-2024 11:50 138069627
Granta519_EBF1-RG_dTAG_cl27_HiChIP.hic 09-Sep-2024 10:12 6339434450
Granta519_EBF1_RG_HiChIP_Ciscontacts_longRange...> 16-Aug-2024 08:30 3760
Granta519_EBF1_RG_HiChIP_Ciscontacts_longRange...> 16-Aug-2024 08:30 147
Granta519_MicroC_EBF1KIcl27_0h_hg38_EBV.hic 16-Sep-2024 08:30 7529038462
Granta519_MicroC_EBF1KIcl27_24h_hg38_EBV.hic 18-Sep-2024 08:37 6790428696
Granta519_MicroC_EBF1KIcl27_24h_hg38_EBV_noMapQ..> 19-Sep-2024 08:54 7500551777
Granta519_ONT_10KB_porechop.bam 01-Jul-2025 09:55 80
Granta519_ONT_10KB_porechop.bam.bai 01-Jul-2025 09:57 84
Granta519_ONT_10KB_porechop_noChrY.bam 01-Jul-2025 09:15 12729229312
Granta519_ONT_10KB_porechop_withRG_correctSeqNa..> 01-Jul-2025 12:35 137
Granta519_ONT_10KB_porechop_withRG_correctSeqNa..> 01-Jul-2025 12:36 141
Granta519_cl27_EBF1-HiChIP_RG.hic 15-Sep-2024 15:41 6339434471
H1_CTCF_rep1.noScaffold.nodup.bw 21-Jul-2023 08:22 118325786
H1_CTCF_rep1_.filt.srt.nodup.noBlack.bam.bw 21-Jul-2023 08:51 98526748
H3K27ac_SOX9-KO_consensusPeaks.bed 09-Jan-2024 11:05 981657
HPAP-001_exocrine_107457_FGC2365_s_1_GGCAAGTT.n..> 07-Jun-2023 12:26 40721226
HPAP-001_exocrine_107457_FGC2365_s_2_GGCAAGTT.n..> 07-Jun-2023 12:26 42381031
HPAP-001_exocrine_107457_FGC2386_s_1_GGCAAGTT.n..> 07-Jun-2023 12:26 43436627
HPAP-001_exocrine_107457_FGC2386_s_2_GGCAAGTT.n..> 07-Jun-2023 12:26 64763462
Jeko1_10KB_ONT_porechopped.bam 08-Jul-2025 13:39 75
Jeko1_10KB_ONT_porechopped.bam.bai 08-Jul-2025 13:39 79
Jeko1_MicroC_ctrl_hg38_mapq30.hic 05-Jul-2025 13:29 77
MB157_SMC1_DMSO_CombinedFastq_hicpro.hic 18-Dec-2023 15:26 1362667417
MB157_SMC1_DMSO_HiCmatrix_chr1769000000-7100000..> 19-Dec-2023 16:03 264328
MB157_SMC1_GSI_HiCmatrix_chr1769000000-71000000..> 19-Dec-2023 16:03 264710
MB157_SMC1_WO_HiCmatrix_chr1769000000-71000000.pdf 19-Dec-2023 16:03 264457
PLN_RNAAssay_HighlyVariableGenes_allCells.tsv 25-Jul-2024 19:40 1219187624
PLN_RNAAssay_HighlyVariableGenes_allCells_Label..> 25-Jul-2024 19:40 1230743
Rec1_ONT_10KB_porechopped.bam 08-Jul-2025 14:15 73
Rec1_ONT_10KB_porechopped.bam.bai 08-Jul-2025 14:15 77
S01_210917_Granta519Cas9_EBF1_RG_HiCHIP_Nova_S1..> 04-Jun-2024 14:35 75202860
S01_230116_Granta519EBF1KI_cl27_0hr_H3K27ac_CHI..> 19-Apr-2024 14:14 737184587
S01_230612_HPAP121_spleen_CD3Tcell_Arima_HiC_S1..> 09-Aug-2023 15:09 4213909145
S02_210829_Granta_CTCF_ChIP_merged_peaks.bb 08-May-2024 08:44 567427
S02_210829_Granta_CTCF_ChIP_merged_peaks_FIMO-C..> 08-May-2024 08:48 584543
S02_210829_Granta_CTCF_ChIP_merged_peaks_FIMO-C..> 08-May-2024 09:07 464180
S02_210829_Granta_CTCF_ChIP_merged_sorted.bw 19-Apr-2024 14:09 692387073
S02_210917_Granta519Cas9_EBF1_MP_HiCHIP_Nova_hi..> 18-May-2023 12:40 1300264544
S02_230612_HPAP121_spleen_CD20Bcell_Arima_HiC_S..> 09-Aug-2023 08:51 4349011096
S90_170314_MB157_DMSO_H3K27ac_merged_noBlack_so..> 30-May-2023 11:15 134052027
SOX9EssentialityScore_BreastCancer_BasalvsOther..> 31-Dec-2023 11:59 5464
SRR1019705.bw 16-May-2024 20:47 224501715
SRR21016742.bw 18-Oct-2024 08:50 98262194
SRR21016743.bw 18-Oct-2024 08:50 149560805
SRR21016744.bw 18-Oct-2024 08:50 179340957
SRR21016745.bw 18-Oct-2024 08:50 137261297
SRR21016746.bw 18-Oct-2024 08:50 171656820
SRR21016747.bw 18-Oct-2024 08:50 151993913
SRR21016748.bw 18-Oct-2024 08:50 165484347
SRR21016749.bw 18-Oct-2024 08:50 168214188
SRR21016750.bw 18-Oct-2024 08:50 173872647
SRR21016751.bw 18-Oct-2024 08:50 209916270
SRR21016752.bw 18-Oct-2024 08:50 140688552
SRR21016753.bw 18-Oct-2024 08:50 163928670
SRR21016754.bw 18-Oct-2024 08:50 99875109
SRR21029712.bw 24-Apr-2024 09:14 123284055
SRR21029713.bw 24-Apr-2024 09:14 100167994
SRR21029714.bw 24-Apr-2024 09:14 89066546
SRR21029715.bw 24-Apr-2024 09:14 98264450
SRR21029716.bw 24-Apr-2024 09:14 98790828
SRR21029717.bw 24-Apr-2024 09:14 118677579
SRR24556988.bw 24-Apr-2024 10:07 327904327
SRR24556990.bw 24-Apr-2024 10:07 160644691
SRR24557008.bw 05-May-2024 17:15 391209339
SRR24557010.bw 05-May-2024 17:15 297094222
SRR26459771.bw 06-Nov-2023 09:40 250064021
allDots_scores.dots_clustered.dots_longRange_Wa..> 11-Feb-2023 22:27 1157163
chr3_chr18_aligned.bam 01-Jul-2025 09:15 1262883287
chr3_chr18_aligned.bam.bai 01-Jul-2025 09:15 294568
cond2_Granta519EBF1KI_cl27_24hr_vs_cond1_Granta..> 26-Jun-2023 21:03 4625980
cooltools_dots.dots_longRange_WashU.tsv 11-Feb-2023 22:19 452056
ebv.custom.gtf 23-Aug-2024 08:46 38858
fimo_ucsc.bed 23-Jun-2025 14:08 250
hg38.analysisSet.NoPatch.fa 12-Aug-2025 13:42 3088458393
inter_30.hic 07-Oct-2024 12:33 6603011978
make_wugb_json.py 24-Oct-2025 08:47 4222
mango.out.bb 05-Jun-2024 08:43 21391
mango.out.full.bb 05-Jun-2024 14:40 114068953
ragtag.scaffold.fasta 22-Jul-2025 19:12 21
ragtag.scaffold.fasta.fai 22-Jul-2025 19:13 25
renamed.fasta 01-Jul-2025 10:02 3088458402
renamed.fasta.fai 01-Jul-2025 10:02 1160
s01_210827_Granta519_SMC1_ChIP_rep1_S1.bw 25-Sep-2024 12:26 358981869
s01_210827_Granta519_SMC1_ChIP_rep1_S1_NEW.bw 25-Sep-2024 20:50 358069035
s01_211221_Granta519Cas9_H3K27ac_ChIP_rep1_S1.bw 07-Oct-2024 13:22 228391830
s01_211221_Granta519Cas9_H3K27ac_ChIP_rep1_S1_p..> 06-Nov-2023 10:38 5882772
s01_221126_Granta519EBF1KI_cl29_0hr_RNAseq_rep1..> 22-Jan-2024 13:03 72781768
s01_230103_Granta519EBF1KI_cl27_0hr_H3K27ac_ChI..> 30-Jun-2025 14:51 2366023658
s01_230824_SP49_GSI_GSI_H3K27ac_CnR_rep1_S1.All..> 05-Jan-2024 13:52 521449458
s01_230824_SP49_GSI_GSI_H3K27ac_CnR_rep1_S1.Hig..> 06-Sep-2023 09:20 31083623
s01_230824_SP49_GSI_GSI_H3K27ac_CnR_rep1_S1.siz..> 08-Nov-2023 15:34 107813565
s01_230824_SP49_GSI_GSI_H3K27ac_CnR_rep1_S1_pea..> 05-Jan-2024 13:57 3674589
s01_s02_Granta519_SMC1_ChIP_rep1_rep2_merged_EB..> 22-Aug-2024 13:17 459359
s01_s02_s03_Granta519cl27_6hdTAGWO_RNAseq_lib1_..> 01-Oct-2024 12:21 386646478
s01_s02_s38_s40_allMerged_insulationScores_boun..> 23-May-2023 08:43 388838
s01_s02_s38_s40_allMerged_insulationScores_boun..> 23-May-2023 08:44 143381
s01_s38_cl27_cl97_MicroC_Granta519_cloneMerged_..> 02-Apr-2023 12:49 991238896
s02_161215_JEKO1_H3K27ac_R1.fastq.gz.bam 10-Jul-2025 10:48 4439030974
s02_210618_Granta519Cas9_ctrl_Arima_HiC_nova_hi..> 02-Apr-2025 12:21 1036155005
s02_210827_Granta519_SMC1_ChIP_rep2_S2_NEW.bw 25-Sep-2024 20:50 313944388
s02_211221_Granta519Cas9_H3K27ac_ChIP_rep2_S2.bw 07-Oct-2024 13:22 447419448
s03_s04_Granta519_CTCF_ChIP_rep1_rep2_merged_EB..> 22-Aug-2024 13:17 445793
s05_s06_Granta519EBF1KI_cl27_24hdTAG_CTCF_ChIPs..> 26-Aug-2024 13:03 424315
s05_s06_Granta519EBF1KI_cl27_24hdTAG_YY1_ChIPse..> 26-Aug-2024 13:03 550673
s05_s06_Granta519_YY1_ChIP_rep1_rep2_merged_EBV.bw 22-Aug-2024 13:17 659336
s07_221115_Granta519EBF1KI_cl27_0hr_RNAseq_rep1..> 28-Oct-2024 14:01 12168147
s07_s08_s09_Granta519EBF1KI_cl27_0hr_RNAseq_rep..> 11-Sep-2024 12:18 457040216
s07_s08_s09_Granta519cl27_24hdTAGWO_RNAseq_lib1..> 01-Oct-2024 12:55 332499839
s09_211221_Granta519Cas9_RBPJ_ChIP_rep2_S8_EBV.bw 22-Aug-2024 13:17 290366
s09_221115_Granta519EBF1KI_cl27_0hr_RNAseq_rep3..> 12-Jul-2024 09:57 218177464
s09_231228_MB157Cas9_ctrl_H3K27ac_rep1_S9.filt...> 09-Jan-2024 10:58 557964057
s09_231228_MB157Cas9_ctrl_H3K27ac_rep1_S9.filt...> 29-Jan-2024 12:37 558801854
s10_211221_Granta519Cas9_NIBPL_ChIP_rep1_S9.noS..> 20-Jul-2023 10:46 645350480
s10_211221_Granta519Cas9_NIPBL_ChIP_rep1_S9.fil..> 20-Jul-2023 10:55 555862538
s10_231228_MB157Cas9_ctrl_H3K27ac_rep2_S10.filt..> 29-Jan-2024 12:37 356442215
s11_230824_JurkatpIndEBF1wt_dox_CTCF_ChIP_S11.A..> 08-Sep-2023 14:36 949480402
s11_230824_JurkatpIndEBF1wt_dox_CTCF_ChIP_S11.H..> 08-Sep-2023 14:36 85370882
s12_231228_MB157Cas9_SOX9_KO_H3K27ac_rep1_S12.f..> 09-Jan-2024 10:58 506761425
s12_231228_MB157Cas9_SOX9_KO_H3K27ac_rep1_S12.f..> 29-Jan-2024 12:37 516517923
s13_230103_Granta519EBF1KI_cl27_24hr_H3K27ac_Ch..> 08-Oct-2024 08:41 882116632
s13_231228_MB157Cas9_SOX9_KO_H3K27ac_rep2_S13.f..> 29-Jan-2024 12:37 547996946
s14_230103_Granta519EBF1KI_cl27_24hr_H3K27ac_Ch..> 08-Oct-2024 08:41 1097096103
s17_221115_Granta519EBF1KI_cl27_8hr_RNAseq_rep2..> 17-Nov-2023 11:11 215629103
s18_190709_DND41_shock_EBF1_ChIP_new_S18.AllRea..> 06-Jan-2024 14:31 702229286
s19_s20_Granta519EBF1KI_0hr_SMC1_ChIP_repMerged..> 10-Apr-2023 13:24 4574121456
s21_230103_Granta519EBF1KI_cl27_24hr_SMC1_ChIP_..> 25-Sep-2024 20:50 428956810
s21_s23_Granta519EBF1KI_cl27_24hdTAG_SMC1_ChIPs..> 25-Sep-2024 13:07 486445
s22_s23_s24_Granta519EBF1KI_cl27_24hr_RNAseq_re..> 11-Sep-2024 12:27 339673849
s23_230103_Granta519EBF1KI_cl27_24hr_SMC1_ChIP_..> 25-Sep-2024 20:50 485801834
s26_221120_Granta519EBF1KI_cl27_0hr_ATACseq_rep..> 28-Oct-2024 14:47 406143124
s32_230329_Mino_GSI_GSI_RNAseq_rep1_S32.bw 09-Nov-2023 16:04 168607126
s33_230329_Mino_GSI_GSI_RNAseq_rep2_S33.bw 09-Nov-2023 16:04 180078634
s34_230329_Mino_GSI_GSI_RNAseq_rep3_S34.bw 09-Nov-2023 16:04 193237806
s35_230329_Mino_GSI_WO_RNAseq_rep1_S35.bw 09-Nov-2023 16:04 190597425
s36_230329_Mino_GSI_WO_RNAseq_rep2_S36.bw 09-Nov-2023 16:04 185074498
s37_230329_Mino_GSI_WO_RNAseq_rep3_S37.bw 09-Nov-2023 16:04 184532572
s38_221203_Granta519EBF1KI_EBV_cl27_0hr_MicroC_..> 01-Aug-2024 12:56 333966430
s38_221203_Granta519EBF1KI_cl27_0hr_MicroC_25U_..> 24-Nov-2023 19:27 416104578
s38_221203_Granta519EBF1KI_cl27_0hr_MicroC_25U_..> 23-Aug-2025 11:52 7278421485
s45_s46_Granta519EBF1KI_cl27_0hr_EBF1_CHIPseq_r..> 15-Aug-2024 15:29 697256
s45_s46_Granta519EBF1KI_cl27_0hr_EBF1_ChIPseq_r..> 08-Aug-2024 14:18 1642170448
s51_s52_Granta519EBF1KI_cl27_24hr_EBF1_ChIPseq_..> 25-Sep-2024 12:35 1877261458
test.bw 24-Apr-2024 10:48 313912903
test.bw.chr.bw 24-Apr-2024 11:22 313912966